13 Day Feb-Mar Plum Blossoms

Hello, I tried the JR Fare Calculator but could not get it to work so appreciate your options for JR Rail Pass, multi-day Pass, and regional such as Misaki Maguro Pass. Please include which days to use (start) each pass.

These are the days starting Friday.
1 Haneda 7pm - Tokyo
2 Mitaka day trip
3 Miura, Misaki & Yokohama day trip
4 Osaka
5 Nachikatsuura
6 Osaka
7 Kyoto day trip
8 Tokyo
9 Mito day trip
10 Tokyo area
11 Tokyo area
12 Tokyo area
13 Haneda 8pm

Thank you very much.