itinerary check

Hello
Next month I'll finally come in Japan, but please, I need a little help for my itinerary and I have a couple of question:

this is the route
Narita Airport, Tonosawa, Izu-Kogen, Kyoto, Kanazawa, Tokyo, Narita Airport

From NARITA AIRPORT TERMINAL 1 to TONOSAWA 12:20 pm Nov/2016/07 details:
From Narita Airport Terminal 1 to Shinagawa with LTD. EXP. NARITA EXPRESS 20 (Included inside jrp)
From Shinagawa to Odawara with Shinkansen Kodama 659 (Included inside jrp)
From Odawara to Hakone - Yumoto with Hakone Tozan Railway for HAKONE-YUMOTO (outisde jrp)
From Hakone - Yumoto to Tonosawa with Hakone Tozan Railway for Gora (outside jrp)

From Tonosawa to Izu-Kogen 09:53 am Nov/2016/10 details:
From Tonosawa to Hakone - Yumoto with Hakone Tozan Railway for Hakone-Yumoto (outside jrp)
From Hakone-Yumoto to Odawara with Hakone Tozan Railway for ODAWARA (outside jrp)
From Odawara to Atami with SHINKANSEN KODAMA 645 (Included inside jrp)
From Atami to Izu-kogen with LTD. EXP SUPER VIEW ODORIKO 3 (is this inside the jrp?)

From Izu-Kogen to Kyoto 12:46 pm Nov/2016/11 details:
From Izu-Kogen to Odawara with LTD. EXP ODORIKO 106 (Included inside jrp)
From Odawara to KYOTO with SHINKANSEN HIKARI 515 (Included inside jrp)

From Kyoto to Kanazawa 11:10 am Nov/2016/15 details:
From Kyoto to Kanazawa with LTD. EXP Thunderbird 17 (Included inside jrp)

From Kanazawa To Tokyo 11:56 am Nov/2016/17 details:
From Kanazawa to Tokyo with Shinkanse Hakutaka 562 (is this inside the jrp?)

From Tokyo to Narita Airport 10:00 am Nov/2016/19 details:
From Tokyo to Narita Airport with LTD. EXP NARITA EXPRESS 15 (Included inside jrp)

Do you see any error? Do you know a better travel route for my destinations?
Are the Shinkanse Hakutaka and LTD. EXP SUPER VIEW ODORIKO 3 inside the JRP?

I read on internet that in Tokyo I can't smoke on the streets. What about the other Japan cities?

Thank you very much!
Bye